| Apoel Nicosia | BATE | 2-0 / 0-3 (aet) |
| Derry City | Pyunik | 0-0 / 0-2 |
| Khazar Lenkoran | Dinamo Zagreb | 1-1 / 1-3 (aet) |
| Linfield | IF Elfsborg | 0-0 / 0-1 |
| Murata | Tampere United | 1-2 / 0-2 |
| Olimpi Rustavi | Zhenis Astana | 0-0 / 0-3 |
| The New Saints FC | FK Ventspils | 3-2 / 1-2 |
| Zeta Golubovci | FBK Kaunas | 3-1 / 2-3 |
| Pobeda | Levadia Tallin | 0-1 / 0-0 |
| Dudelange | Zilina | 1-2 / 4-5 |
| FC Sheriff | FC Rangers | 2-0 / 3-0 |
| Marsaxlokk FC | FK Sarajevo | 0-6 / 1-3 |
| NK Domzale | KF Tirana | 1-0 / 2-1 |
| Hafnarfjordur | HB Tуrshavn | 4-1 / 0-0 |
| Rangers | Zeta | 2-0 / 1-0 |
| Kobenhavn | Beitar Jerusalem | 1-0 / 1-1 (aet) |
| Tampere | Levski | 1-0 / 1-0 |
| Pyunik | Shakhtar | 0-2 / 1-2 |
| Debrecen | Elfsborg | 0-1 / 0-0 |
| Zaglкbie | Steaua Bucharest | 0-1 / 1-2 |
| Genk | Sarajevo | 1-2 / 1-0 |
| Domћale | Dinamo Zagreb | 1-2 / 1-3 |
| Besiktas | Sheriff | 1-0 / 3-0 |
| Ventspils | Salzburg | 0-3 / 0-4 |
| Astana | Rosenborg | 1-3 / 1-7 |
| Hafnarfjцrdur | BATE | 1-3 / 1-1 |
| Crvena Zvezda | Levadia | 1-0 / 1-2 |
| Zilina | Slavia | 0-0 / 0-0 (pen) |
| Lazio | Dinamo Bucuresti | 1-1 / 3-1 |
| Rangers | Crvena Zvezda | 1-0 / 0-0 |
| Valencia | Elfsborg | 3-0 / 2-1 |
| Benfica | Kobenhavn | 2-1 / 1-0 |
| Toulouse | Liverpool | 0-1 / 0-4 |
| Sarajevo | Dynamo Kyiv | 0-1 / 0-3 |
| Fenerbahçe | Anderlecht | 1-0 / 2-0 |
| Sparta | Arsenal | 0-2 / 0-2 |
| Zürich | Besiktas | 1-1 / 2-0 |
| BATE | Steaua | 2-2 / 0-2 |
| Tampere | Rosenborg | 0-3 / 0-2 |
| Spartak Moskva | Celtic (3-4p) | 1-1 / 1-1 |
| Bremen | Dinamo Zagreb | 2-1 / 3-2 |
| Salzburg | Shakhtar | 1-0 / 1-3 |
| Ajax | Slavia | 0-1 / 1-2 |
| Sevilla | AEK | 2-0 / 4-1 |
